Scripps Mercy Hospital Pharmacy Residency
Pharmacy residency programs at Scripps Mercy

Pharmacy residency programs at Scripps Mercy
Scripps Mercy Hospital in San Diego offers four 12-month PGY1 pharmacy residency positions, one PGY2 emergency medicine pharmacy resident position, one PGY2 psychiatric pharmacy resident position and one PGY2 oncology pharmacy resident position.
Our programs are designed to develop confident, clinically skilled pharmacists who excel in providing patient-centered care across a variety of acute care settings. Residents gain extensive hands-on experience managing complex patients as integral members of the multidisciplinary health care team
Program highlights
Scripps Mercy Hospital San Diego
Scripps Mercy Hospital consists of two campuses in San Diego and Chula Vista. Scripps Mercy Hospital San Diego has served central and downtown San Diego since 1890 making it the oldest and largest teaching hospital in San Diego County.
- Scripps Health is ranked among the top in San Diego on the U.S. News & World Report Best Hospitals list and as high performing in multiple specialties.
- Listed by Fortune magazine as one of the best places to work
- Joint Commission-certified Thrombectomy-Capable Stroke Center
- Magnet recognized hospital
- Level I trauma center
- Busiest emergency department in San Diego
- Licensed for more than 500 acute care beds
- Prebys Cancer Center
The pharmacy residency program resides on the San Diego campus, which is the primary site for the clinical education of more than 100 internal medicine, family medicine, trauma and podiatry residents, as well as medical students, other health professionals and fellows.
The Scripps Mercy Hospital San Diego Pharmacy Residency Program offers residents a rewarding academic experience in a progressive environment that prepares residents for leadership roles in the pharmacy profession. Clinical and distributive services are provided by full-time, unit-based pharmacists — many of whom have advanced clinical training. Scripps Mercy’s pharmacists enjoy sharing their breadth of knowledge by precepting both pharmacy residents and students.
- The pharmacy department is open 24/7 and includes a main pharmacy, oncology infusion center, 11 clinical pharmacist practice settings, nine satellite locations and telepharmacy services.
- More than 30 clinical pharmacists on staff provide a broad range of clinical services, carry out pharmacist-driven medication protocols, staff our oncology infusion center, and teach pharmacy students, medical and pharmacy residents.
- Pharmacy residents have direct access to pharmacy faculty, are integrated into the medical teaching program and are considered “house staff” with similar privileges as medical residents.
- Residents complete a broad depth of clinical rotations tailored to individual experience, interests and career goals, and each resident may participate in programs throughout Scripps’ five campus locations.
- Residents conduct IRB-approved research, present at international and national meetings, and have the opportunity to earn a teaching certificate.
Clinical rotations and experiences
The Scripps Mercy Hospital Pharmacy Residency Programs are uniquely situated in a variety of acute care settings, which exposes residents to the highest-quality learning experience possible.
Research projects, presentations and publications
Scripps Mercy Hospital pharmacy residents conduct institutional review board IRB-approved research during their resident year.
The research project is chosen based on the resident’s interest and the feasibility of completion during the resident year. From inception to completion, the resident manages the research project and is required to present the abstract at a national meeting.
View a list of Scripps Mercy Hospital pharmacy resident research publications and presentations (PDF, 160 KB).
Faculty and residents
Residents at Scripps Mercy Hospital work under the mentorship of experienced pharmacy experts who have Board Certification (BPS) in Pharmacotherapy and/or specialty area of practice. With academic scholarship at the core of the pharmacy residency program, our team is dedicated to delivering superior medical education and guidance to meet your interests and career goals.
Scripps Mercy Pharmacy Residents Celebrate Graduation June 2024

Salary and benefits
The terms and conditions of resident training and employment are specified in the employment agreement that also includes training obligations, stipend and benefit provisions. The pharmacy residency manual fully describes policies, practices and procedures. A copy of the employment agreement, a sample yearly rotation schedule and other pertinent materials are provided at the time of the interview.
The annual stipend and specific benefits are listed in the employment agreement, discussed in the residency manual and summarized below.
How to apply
The PGY1 Pharmacy Practice Residency match code is 128113.
The PGY2 Psychiatry Residency match code is 749266.
The PGY2 Oncology Pharmacy Residency match code is 601360.
The PGY2 Emergency Pharmacy Residency match code is 674969.
All residency positions at Scripps Mercy Hospital San Diego are 12-month commitments typically starting in early July. The application submission deadline is January 3.
Virtual Open Houses
Thursday, November 20, 2025 from 5 pm PST
Thursday, December 18, 2025 from 5 pm PST
Please contact the respective residency program directors via email to schedule a virtual open house slot.