Gastroenterology and Hepatology Fellowship

Dear Fellowship Candidate,

At Scripps, we provide outstanding training for physicians in gastroenterology and hepatology. Our goal is to graduate fellows who are superb clinicians and scientists; maintain the highest ethical, humanistic and professional principles; and are prepared for life-long learning, independent and critical thinking and constant self-improvement. Our graduates have proven themselves as superior teachers for patients, colleagues and trainees at every level. Academic scholarship is a critical part of our program, which has produced many outstanding clinical scientists.

To reach these goals, we have a group of excellent gastroenterology and hepatology faculty. Our accomplished advanced endoscopists and offer a full range of services, including therapeutic ERCP, diagnostic and therapeutic EUS, capsule endoscopy, enteroscopy, cholangioscopy, POEM, ESD, mucosal ablation and cryotherapy. Our teaching faculty have a worldwide reputation, and we are the first center to offer a curriculum for training in intestinal ultrasound for IBD. Scripps Clinic is a busy referral center, from around the region and the world, and the depth and breadth of our patient population is excellent.

I am honored to be the program director for the Scripps Clinic and Scripps Green Hospital Gastroenterology and Hepatology Fellowship Program. Like our other faculty, I take great pleasure in coming to work each day and supporting our fellows with their training and research. Each year, we set lofty goals for ourselves, and each year we surpass them.

Franklin Tsai, MD

Fellowship Program Director

Scripps Clinic and Scripps Green Hospital Gastroenterology and Hepatology Fellowship Program

Dear Fellowship Candidate,

The Division of Gastroenterology and Hepatology at Scripps Clinic is a strong group of gastroenterologists and hepatologists who are focused on excellence in clinical care, the pursuit of translational and clinical research and the education of gastroenterology fellows.

We have a national reputation for superb care and provide services in primary and tertiary gastrointestinal (GI) consultation. We provide subspecialty GI care in the areas of inflammatory bowel disease, esophageal motor disorders, treatment of viral liver diseases, and advanced endoscopy techniques.

We have developed an esophageal center of excellence with focus on Barrett’s esophagus and esophageal cancer providing ablative services by radiofrequency ablation and cryoablation. We also have a pancreaticobiliary cancer team that participates in the Pancreatic Cancer Action Network (PanCan) and provides state-of-the-art endoscopic and oncologic treatment of all pancreaticobiliary cancers.

Our team of physicians remains on the leading edge of gastroenterology and hepatology with multiple publications on the treatment of Hepatitis C, cirrhosis, ablation of dysplastic Barrett’s esophagus, esophageal adenocarcinoma, inflammatory bowel disease and the educational aspects of endoscopic teaching.

Our gastroenterology fellowship has a national reputation and we receive greater than 400 applicants each year for our training positions. Our graduating fellows find careers in academics and clinical medicine.

We are associated with the Scripps Translational Science Institute (STSI) and The Scripps Research Institute (TSRI). Our fellows and faculty work with these institutes in translational and clinical research. We continue to grow our faculty and patient population and will continue to be leaders in the field of gastroenterology and hepatology into the future.

Regards,

Walter Coyle, MD

Fellowship Division Head

Gastrenterology and Hepatology Fellowship Program

Scripps Clinic and Scripps Green Hospital

Sample of clinical rotations:

• Advanced endoscopy
• Inflammatory bowel disease (IBD)
• Inpatient GI
• Inpatient hepatology
• Motility
• Outpatient GI/research
• Outpatient hepatology/transplant
• Surgery, radiology, nutrition and pathology
• Electives

The Division of Gastroenterology and Hepatology is exceptionally productive and fellows have access to a wealth of endoscopic training. Our fellows perform an average of at least 400 procedures during their first year and over 1,000 procedures before graduation. During an average year, the Division performs approximately:

• 6,000 colonoscopies
• 2,000 esophagogastroduodenoscopies (EGDs)
• 300 endoscopic ultrasounds
• 250 ERCPs
• 100 liver biopsies

The advanced endoscopy group performs more than 600 procedures each year, including:

• Anorectal motility testing
• ERCPs
• Endoscopic ultrasonography (EUS) with fine-needle aspiration
• Esophageal motility testing including EndoFLIP/EsoFLIP
• Single-balloon enteroscopy
• Choledochoscopy (Spyglass)
• Capsule endoscopy
• Radiofrequency ablation 
• Cryotherapy ablation
• EUS guided fiducial placement
• Enteral stenting techniques
• Per-oral endoscopic myotomy (POEM)
• Endoscopic submucosal dissection (ESD)
• Transoral incisionless fundoplication (TIF)
• Endoscopic suturing
• Endoscopic sleeve gastrectomy (ESG)

Fellows have the opportunity to gain experience in these procedures as early as their second year.

Clinical and research training in gastroenterology and hepatology

The Scripps Clinic and Scripps Green Hospital Gastroenterology and Hepatology Fellowship Program started in 1959 and is the oldest in San Diego. It is a three-year ACGME-accredited training program, designed to provide clinical expertise in gastroenterology and hepatology. The curriculum is structured to provide the full spectrum of educational experiences. After completing the program, fellows are fully prepared for board certification in both gastroenterology and transplant hepatology.

Gastroenterology and oncology

Scripps Clinic has a nationally recognized expertise in the treatment of GI and liver malignancies. The Scripps Clinic Esophageal Center is a site of excellence with a unique focus on Barrett’s and early esophageal cancer providing ablative services by radiofrequency ablation and cryoablation. We have created a large multi-disciplinary pancreaticobiliary cancer team that participates in the national PanCan network. This team of gastroenterologists, oncologists and surgeons provides state-of-the-art endoscopic and oncologic treatment of pancreatic and biliary cancers. We have access to multiple leading-edge protocols and are having great success in treating our patients. We have expanded our treatment of liver cancers providing resection, transplant and advanced radiation treatment to our patients. Our colorectal service provides state-of-the-art care from endoscopic diagnosis and treatment to surgical resection using minimally invasive techniques and endoscopic submucosal dissection (ESD).

Hepatology

The program is run by five hepatologists including four transplant hepatologists that are closely involved in trainee education. Our hepatitis study group is one of the largest referral centers for chronic viral hepatitis treatment in the United States. We collaborate with The Scripps Research Institute and many other centers around the country. Our members present and publish research regularly and lecture nationally and internationally. 

Research

Fellows have many opportunities to participate in ongoing research projects. All trainees must develop their own research project and are expected to publish in a peer-reviewed journal. Fellows are encouraged to participate in local, regional and national professional organizations. Many trainees have presented abstracts that have been honored at the national level. The Division is active in clinical research in viral hepatitis diagnosis and treatment, cirrhosis and cholestatic diseases liver (PBC, PSC), colon cancer detection, organ transplantation, circulating tumor cells in pancreatic cancer, hepatocellar carcinoma, therapeutic procedures in Barrett’s esophagus, including radiofrequency ablation, cryoablation and endoscopic mucosal resection, and inflammatory bowel disease, including Crohn’s disease and ulcerative colitis.

• Sample didactics schedule (PDF, 59 KB)
• Sample gastroenterology fellowship curriculum (PDF, 130 KB)
• Sample advanced endoscopy rotation (PDF, 82 KB)

• Walter Coyle, MD — Division head
• Franklin Tsai, MD — Program director
• Mazer Ally, MD
• Jennifer Au, MD
• Ahmed Deabes, MD
• Adam Deising, DO
• Ali Fakhreddine, MD
• Julio Gutierrez, MD
• Faizi Hai, MD
• Douglas Hunt, MD
• Behnam Moein Jahromi, MD
• Gordon L. Kim, MD
• Gauree Konijeti, MD
• John “Gus” Kuldau, MD
• Jill Lane, MD
• Raymond Lee, MD
• Gordon Liss, MD
• John Lyons, MD
• Ahmad Mansour, MD
• Chiara Maruggi, MD
• Fouad Moawad, MD
• Quan Nhu, MD
• Richard Nodurft, MD
• Paul Pockros, MD
• Kristina Seeger, MD 
• Emily Singh, MD
• Matthew Skinner, MD
• Sujan Thiruvengadam, MD
• Han Zhang, MD

Scripps Clinic/Green Hospital fellowship pay and benefits:

• PGY IV year - $95,907
• PGY V year - $100,146
• PGY VI year - $104,467

Salary scale 2025-2026 (PDF, 130 KB)

*Including a housing stipend

Insurance

• Health and dental insurance plans are available for fellows and their dependents for a minimal cost. Fellows may participate in the Scripps Wellness program to reduce their health care premiums. Confidential counseling and psychological support services are available on request.
• Life insurance coverage, up to $1,000,000, is available for fellows and their dependents.
• Long-term disability insurance, at Scripps rates, is available for purchase. State Disability Insurance is paid by the fellow. The State of California requires this contribution.
• Fellows are covered by malpractice insurance while performing services within the scope of their training at Scripps Clinic. The liability limit is $5,000,000 per claim/$5,000,000 annually. Tail coverage is provided.

Educational expenses

Scripps provides an educational expense allowance annually to each fellow for professional meetings and conferences, books and journals, professional dues and other educational expenses.

Vacations and leave

Fellows receive 20 vacation days annually. Six paid sick days are allotted annually. Parental and other leaves of absence follow Scripps policy and California State Law. Substantial absences may necessitate additional rotations to complete training.

Other benefits

• Lab coats and scrubs are provided and laundered by Scripps
• Paid parking in the adjacent gated and covered structure is provided at no cost
• A full-service cafeteria is located in the hospital
• Call rooms are provided
• Scripps Health non-profit 501(c)(3) – Public Service Loan Forgiveness (PSLF) programs

Applicants interested in applying to fellowship, should apply using the Electronic Residency Application Service (ERAS).

Please note that all interviews for this year will be conducted virtually per AAMC recommendations and there will be no in-person visit option.

Applicants interested in applying to Micrographic Surgery and Dermatologic Oncology, do not apply in ERAS and should refer to the program link for information on applying.

Please provide the following:

• Completed application
• Curriculum vitae
• Personal statement
• Three endorsement letters (one from a residency program director and two from subspecialty faculty members)
• Medical school transcript
• ECFMG certificate (if applicable)
• USMLE transcript or Comlex scores

Matching program

Programs that use the Medical Specialties Matching Program (MSMP) of the National Residency Matching Program (NRMP):

• Advanced Heart Failure and Transplant Cardiology
• Allergy and Immunology 
• Cardiovascular Diseases
• Endocrinology, Diabetes & Metabolism
• Gastroenterology and Hepatology
• Hematology/Oncology
• Micrographic Surgery and Dermatologic Oncology SF Match
• Rheumatology

Visit NRMP to register for a match.

Visit SF Match to register for Micrographic Surgery and Dermatologic Oncology.

• Applicants must have completed, or expect to complete, an ACGME-accredited residency program.
• All licenses, ECFMG certification, and professional certifications are the applicant’s responsibility.
• Scripps Clinic does not operate its own J-1 or H-1 visa program.
• MUST have a current California Physician's and Surgeon's License and DEA certificate by start date. Please see Medical Board of California requirements for licensure.

To learn more about the Gastroenterology and Hepatology Fellowship Program at Scripps Clinic, contact Samantha Brown at 858-554-3200 or email brown.samantha@scrippshealth.org.